No I want them to heavy focus on a war against Humans that hates Mutants and also a caution against AI like the Sentials, Trask, Master Mold, Senator Robert Kelly, Willam Stryker. and later on Bastion, You can even connected it to the Anti-Enhanced Movement that was around a little bit with the Accords.
Again it's doesn't have to be a one for story repeat from X-Men92/97, they can skip over the Phoenix Saga for now and just replaced it with God Loves, Man Kills Storyline or another arc that heavy focus on the Anti-Mutant Movement. We just can't afford to turn either the Avengers (The heroes who we have been following since 2009) or the New Kids on the block in the X-Men during the first arc just cause it would sell money. That would ruined one of the teams.