Board Thread:Questions and Answers/@comment-4528975-20160207015723/@comment-30536711-20160503051410

AIM's current status is unknown, so they could have taken the opportunity to rebuild and reorganize using SHIELD's apparent downfall, HYDRA's operations, and the sudden appearance of Inhumans in different parts of the world, to carry out covert actions and develop more advanced tech for use or black market activity.

Also Ian Quinn is still at large and has a potentially soon to be dangerous individual in his possession and how that plays out is anyone's guess.